Version 1.2

New features/Improvements:

  • "Additional settings for ST.25 format" window. The following options can be chosen:
    • use/do not use negative numbering for amino acids preceding the mature protein (feature keys: sig_peptide, mat_peptide, SIGNAL, PROPEP) (see ST.25, par. 21);
    • include/do not include the conceptual translation by means of a translation table qualifier for each CDS feature (see ST.25, Appendix II, Table 5);
    • present/do not present in mixed mode the sequences containing CDS features (see ST.25, par. 20). (Note: in case of overlapping CDSs, only the first one will be represented in mixed mode);
    • generate/do not generate amino acid sequences corresponding to the CDS features (if not previously done) (see ST.25, par. 7);
  • Support for publication information (numeric items <300> - <313>)
  • Support for all obsolete EMBL feature keys still valid under ST.25 (see ST.25, Appendix II, Tables 5 and 6)
  • Amino acid sequences corresponding to the CDS features are appended at the end of the current list of sequences
  • Alternative translation tables can be used
  • Maximum number of characters set to 260 for additional information (within a feature)
  • Improved error and warning messages
  • Disclaimer added to "Loading sequence listing" window
  • Definitions of protein feature keys added to the Help
  • Improved reordering of the sequences
  • Taxonomy update can be launched upon user's request

User guide

The user guide has been updated accordingly.

History

Version 1.1

Contains new features, minor technical corrections and functional changes.

Please note: during the creation of RNA sequences, 'u' is not replaced by 't'

New features:

  • "Save" button in all editors
  • Double-clicking the elements opens an editor. The "Details editors" have been removed
  • You can copy/paste several elements of the same type (e.g. features) in a single operation
  • "Additional Sequence Description" field in the "Create Sequence Dialog". The content of this field (if not empty) is added as a 'note' qualifier in the 'source' feature. This field becomes mandatory if the 'Organism' field is set to "Artificial/Unknown"
  • The 'mol_type' qualifier values now depend on the molecule-type field in the sequence

Changes:

"Synthetic construct" is converted to "Artificial sequence", not vice versa

Fixes:

  • Problems concerning insufficient privileges for users without administrative rights solved
  • Shortcut keys

User guide

The user guide has been updated accordingly.

Version 1.0

  • The "look and feel" of the application has been brought into line with other applications developed by the EPO.