SEQUENCE LISTING
<110> Smith, John
<120> Example of a Sequence Listing
<130> 11-00001
<140> EP1200123456
<141> 2012-08-01
<150> US12345678
<151> 2011-08-01
<160> 12
<170> BiSSAP 1.2
<210> 1
<211> 227
<212> DNA
<213> Homo sapiens
<220>
<221> source
<222> 1..227
<223> /organism="Homo sapiens"
/mol_type="unassigned DNA"
<400> 1
atgttggggg cccgcctcag gctctgggtc tgtgccttgt gcagcgtctg cagcatgagc 60
gtcctcagag cctatcccaa tgcctcccca ctgctcggct ccagctgggg tggcctgatc 120
cacctgtaca cagccacagc caggaacagc taccacctgc agatccacaa gaatggccat 180
gtggatggcg caccccatca gaccatctac agtgccctga tgatcag 227
<210> 2
<211> 23
<212> DNA
<213> Artificial Sequence
<220>
<221> source
<222> 1..23
<223> /organism="Artificial Sequence"
/note="forward primer"
/mol_type="unassigned DNA"
<400> 2
ggggacaagt ttgtacaaaa aag 23
<210> 3
<211> 29
<212> DNA
<213> Artificial Sequence
<220>
<221> source
<222> 1..29
<223> /organism="Artificial Sequence"
/note="reverse primer"
/mol_type="unassigned DNA"
<400> 3
ccatgaacag ccaaatcacc aacgccaag 29
<210> 4
<211> 240
<212> DNA
<213> Paramecium aurelia
<220>
<221> source
<222> 1..240
<223> /organism="Paramecium aurelia"
/mol_type="unassigned DNA"
<220>
<221> CDS
<222> 52..123
<223> /transl_table=6
<400> 4
agctgtagtc attcctgtgt cctcttctct ctgggcttct caccctgcta a tca gat 57
Ser Asp
1
ctc agg gag agt gtc ttg acc ctc ctc tgc ctt tgc agc ttc aca ggc 105
Leu Arg Glu Ser Val Leu Thr Leu Leu Cys Leu Cys Ser Phe Thr Gly
5 10 15
agg cag gca ggc agc tga tgtggcaatt gctggcagtg ccacaggctt 153
Arg Gln Ala Gly Ser
20
ttcagccagg cttagggtgg gtccgccgcg gcgcggcggc ccctctcgcg ctcctctcgc 213
gcctctctct cgctctcctc tcgctcg 240
<210> 5
<400> 5
000
<210> 6
<211> 251
<212> PRT
<213> Homo sapiens
<220>
<221> VARIANT
<222> 64
<223> Val
<400> 6
Met Leu Gly Ala Arg Leu Arg Leu Trp Val Cys Ala Leu Cys Ser Val
1 5 10 15
Cys Ser Met Ser Val Leu Arg Ala Tyr Pro Asn Ala Ser Pro Leu Leu
20 25 30
Gly Ser Ser Trp Gly Gly Leu Ile His Leu Tyr Thr Ala Thr Ala Arg
35 40 45
Asn Ser Tyr His Leu Gln Ile His Lys Asn Gly His Val Asp Gly Ala
50 55 60
Pro His Gln Thr Ile Tyr Ser Ala Leu Met Ile Arg Ser Glu Asp Ala
65 70 75 80
Gly Phe Val Val Ile Thr Gly Val Met Ser Arg Arg Tyr Leu Cys Met
85 90 95
Asp Phe Arg Gly Asn Ile Phe Gly Ser His Tyr Phe Asp Pro Glu Asn
100 105 110
Cys Arg Phe Gln His Gln Thr Leu Glu Asn Gly Tyr Asp Val Tyr His
115 120 125
Ser Pro Gln Tyr His Phe Leu Val Ser Leu Gly Arg Ala Lys Arg Ala
130 135 140
Phe Leu Pro Gly Met Asn Pro Pro Pro Tyr Ser Gln Phe Leu Ser Arg
145 150 155 160
Arg Asn Glu Ile Pro Leu Ile His Phe Asn Thr Pro Ile Pro Arg Arg
165 170 175
His Thr Arg Ser Ala Glu Asp Asp Ser Glu Arg Asp Pro Leu Asn Val
180 185 190
Leu Lys Pro Arg Ala Arg Met Thr Pro Ala Pro Ala Ser Cys Ser Gln
195 200 205
Glu Leu Pro Ser Ala Glu Asp Asn Ser Pro Met Ala Ser Asp Pro Leu
210 215 220
Gly Val Val Arg Gly Gly Arg Val Asn Thr His Ala Gly Gly Thr Gly
225 230 235 240
Pro Glu Gly Cys Arg Pro Phe Ala Lys Phe Ile
245 250
<210> 7
<211> 886
<212> RNA
<213> Mus musculus
<220>
<221> source
<222> 1..886
<223> /organism="Mus musculus"
/note="mRNA for ubiquitin conjugating enzyme (Ubc25 gene)"
/mol_type="unassigned RNA"
<220>
<221> variation
<222> 459
<223> /allele="Ubc252b"
/frequency="0.4"
/replace="a"
<400> 7
gggccggagc cucggcggcg gcuucuuuuc ccgccccccc ggugcccccc ccaggcugcc 60
uccauuuccu caaggaaggu uccucggcgc ucucccuccc ccacagcgua gcggcgcacg 120
agcgggccgg gcgggcggcc gagaaguuuu cccagagaua aguucaccaa gauguccagu 180
gacaggcaaa ggucggauga ugagagcccu agcaccagca guggcaguuc agaugcagau 240
cagcgagacc cugccgcucc aaagcccgag gaacaggaag aaagaaaacc uucugccacc 300
cagcagaaga aaaacaccaa acucucuagc aaaacgacug cuaaguuauc cacuagugcu 360
aaaagaauuc agaaggagcu agcagagaua acccuugauc cuccuccuaa cugcagugcu 420
gggccuaaag gagauaacau uuaugaaugg aggucaacua uacuuggucc accagguucu 480
guauaugaag gugguguuuu uuuucuggau aucacauuuu cuucagauua uccauuuaag 540
ccaccaaagg uuacuuuccg uaccagaauc uaucacugca acaucaacag ucagggaguc 600
aucugccugg auauucugaa agacaacugg aguccugcuu ugacuauuuc aaagguuuug 660
cucucuauuu guucccuuuu gacagauugc aacccugcgg auccucuggu cggaagcaua 720
gccacucagu auuugaccaa cagagcagaa caugacagga uagccagaca guggaccaag 780
agauacgcaa cauaauucac aucauuugua ugcaguguga aggagcagaa ggccucuucc 840
cacugugcug cggaucuuua uagccuuuac aauacggacu ucugug 886
<210> 8
<211> 803
<212> DNA
<213> Homo sapiens
<220>
<221> source
<222> 1..803
<223> /organism="Homo sapiens"
/mol_type="unassigned DNA"
<220>
<221> CDS
<222> 79..681
<223> /transl_table=1
<220>
<221> sig_peptide
<222> 79..132
<400> 8
gcccatagtt tattataaag gtgactgcac cctgcagcca ccagcactgc ctggctccac 60
gtgcctcctg gtctcagt atg gcg ctg tcc tgg gtt ctt aca gtc ctg agc 111
Met Ala Leu Ser Trp Val Leu Thr Val Leu Ser
-15 -10
ctc cta cct ctg ctg gaa gcc cag atc cca ttg tgt gcc aac cta gta 159
Leu Leu Pro Leu Leu Glu Ala Gln Ile Pro Leu Cys Ala Asn Leu Val
-5 -1 1 5
ccg gtg ccc atc acc aac gcc acc ctg gac cag atc act ggc aag tgg 207
Pro Val Pro Ile Thr Asn Ala Thr Leu Asp Gln Ile Thr Gly Lys Trp
10 15 20 25
ttt tat atc gca tcg gcc ttt cga aac gag gag tac aat aag tcg gtt 255
Phe Tyr Ile Ala Ser Ala Phe Arg Asn Glu Glu Tyr Asn Lys Ser Val
30 35 40
cag gag atc caa gca acc ttc ttt tac ttc acc ccc aac aag aca gag 303
Gln Glu Ile Gln Ala Thr Phe Phe Tyr Phe Thr Pro Asn Lys Thr Glu
45 50 55
gac acg atc ttt ctc aga gag tac cag acc cga cag gac cag tgc atc 351
Asp Thr Ile Phe Leu Arg Glu Tyr Gln Thr Arg Gln Asp Gln Cys Ile
60 65 70
tat aac acc acc tac ctg aat gtc cag cgg gaa aat ggg acc atc tcc 399
Tyr Asn Thr Thr Tyr Leu Asn Val Gln Arg Glu Asn Gly Thr Ile Ser
75 80 85
aga tac gtg gga ggc caa gag cat ttc gct cac ttg ctg atc ctc agg 447
Arg Tyr Val Gly Gly Gln Glu His Phe Ala His Leu Leu Ile Leu Arg
90 95 100 105
gac acc aag acc tac atg ctt gct ttt gac gtg aac gat gag aag aac 495
Asp Thr Lys Thr Tyr Met Leu Ala Phe Asp Val Asn Asp Glu Lys Asn
110 115 120
tgg ggg ctg tct gtc tat gct gac aag cca gag acg acc aag gag caa 543
Trp Gly Leu Ser Val Tyr Ala Asp Lys Pro Glu Thr Thr Lys Glu Gln
125 130 135
ctg gga gag ttc tac gaa gct ctc gac tgc ttg cgc att ccc aag tca 591
Leu Gly Glu Phe Tyr Glu Ala Leu Asp Cys Leu Arg Ile Pro Lys Ser
140 145 150
gat gtc gtg tac acc gat tgg aaa aag gat aag tgt gag cca ctg gag 639
Asp Val Val Tyr Thr Asp Trp Lys Lys Asp Lys Cys Glu Pro Leu Glu
155 160 165
aag cag cac gag aag gag agg aaa cag gag gag ggg gaa tcc 681
Lys Gln His Glu Lys Glu Arg Lys Gln Glu Glu Gly Glu Ser
170 175 180
tagcaggaca cagccttgga tcaggacaga gacttggggc catcctgccc ctccaacccg 741
acatgtgtac ctcagctttt tccctcactt gcatcaataa agcttctgtg tttggaacag 801
ct 803
<210> 9
<211> 595
<212> DNA
<213> Ciona savignyi
<220>
<221> source
<222> 1..595
<223> /organism="Ciona savignyi"
/mol_type="unassigned DNA"
<220>
<221> CDS
<222> 2..595
<223> /transl_table=13
<400> 9
a act ttg tat ttt ata ttt agg act tga tct aga tta att gga act gct 49
Thr Leu Tyr Phe Met Phe Gly Thr Trp Ser Gly Leu Ile Gly Thr Ala
1 5 10 15
ctg agt att att att cga ata gag tta tca cag cct aga gga gta att 97
Leu Ser Ile Ile Ile Arg Met Glu Leu Ser Gln Pro Gly Gly Val Ile
20 25 30
gat aat gag aat aga cat att tat aat gta gta gta act tct cat gct 145
Asp Asn Glu Asn Gly His Ile Tyr Asn Val Val Val Thr Ser His Ala
35 40 45
ttt gtt ata att ttt ttt ttt gtt ata cct att ata att aga ggt ttt 193
Phe Val Met Ile Phe Phe Phe Val Met Pro Ile Met Ile Gly Gly Phe
50 55 60
aga aat tga tta att cct ata ata att gga gct ccg gat ata gcg ttt 241
Gly Asn Trp Leu Ile Pro Met Met Ile Gly Ala Pro Asp Met Ala Phe
65 70 75 80
cct cga ata aat aat ata agc ttt tga tta tta cct cct gct ttt ttt 289
Pro Arg Met Asn Asn Met Ser Phe Trp Leu Leu Pro Pro Ala Phe Phe
85 90 95
atg tta tta aaa agt agt ttt gca gga gca tcg aga gta aga act gga 337
Met Leu Leu Lys Ser Ser Phe Ala Gly Ala Ser Gly Val Gly Thr Gly
100 105 110
tgg aca gtt tat cct cct ttg tct gct acg gta aga cat gct cat tct 385
Trp Thr Val Tyr Pro Pro Leu Ser Ala Thr Val Gly His Ala His Ser
115 120 125
aga gta gat ata gct att ttt tca tta cat tta gct agg gtt tct agt 433
Gly Val Asp Met Ala Ile Phe Ser Leu His Leu Ala Gly Val Ser Ser
130 135 140
att ttg aga tct gta aat ttt tta gtt act tta ttc aat ata aaa aat 481
Ile Leu Gly Ser Val Asn Phe Leu Val Thr Leu Phe Asn Met Lys Asn
145 150 155 160
aaa ggt aaa tcg ata aga gat tta agt ttg ttt tgt tga tct ttg att 529
Lys Gly Lys Ser Met Gly Asp Leu Ser Leu Phe Cys Trp Ser Leu Ile
165 170 175
gtt act aca att cta ctt gta ttg tca ttg ccg gtt tta gct gct gct 577
Val Thr Thr Ile Leu Leu Val Leu Ser Leu Pro Val Leu Ala Ala Ala
180 185 190
att aca atg tta tta ttt 595
Ile Thr Met Leu Leu Phe
195
<210> 10
<211> 23
<212> PRT
<213> Paramecium aurelia
<220>
<223> [CDS]:52..123 from SEQ ID NO 4
<400> 10
Ser Asp Leu Arg Glu Ser Val Leu Thr Leu Leu Cys Leu Cys Ser Phe
1 5 10 15
Thr Gly Arg Gln Ala Gly Ser
20
<210> 11
<211> 201
<212> PRT
<213> Homo sapiens
<220>
<223> [CDS]:79..681 from SEQ ID NO 8
<220>
<221> SIGNAL
<222> 1..18
<400> 11
Met Ala Leu Ser Trp Val Leu Thr Val Leu Ser Leu Leu Pro Leu Leu
-15 -10 -5
Glu Ala Gln Ile Pro Leu Cys Ala Asn Leu Val Pro Val Pro Ile Thr
-1 1 5 10
Asn Ala Thr Leu Asp Gln Ile Thr Gly Lys Trp Phe Tyr Ile Ala Ser
15 20 25 30
Ala Phe Arg Asn Glu Glu Tyr Asn Lys Ser Val Gln Glu Ile Gln Ala
35 40 45
Thr Phe Phe Tyr Phe Thr Pro Asn Lys Thr Glu Asp Thr Ile Phe Leu
50 55 60
Arg Glu Tyr Gln Thr Arg Gln Asp Gln Cys Ile Tyr Asn Thr Thr Tyr
65 70 75
Leu Asn Val Gln Arg Glu Asn Gly Thr Ile Ser Arg Tyr Val Gly Gly
80 85 90
Gln Glu His Phe Ala His Leu Leu Ile Leu Arg Asp Thr Lys Thr Tyr
95 100 105 110
Met Leu Ala Phe Asp Val Asn Asp Glu Lys Asn Trp Gly Leu Ser Val
115 120 125
Tyr Ala Asp Lys Pro Glu Thr Thr Lys Glu Gln Leu Gly Glu Phe Tyr
130 135 140
Glu Ala Leu Asp Cys Leu Arg Ile Pro Lys Ser Asp Val Val Tyr Thr
145 150 155
Asp Trp Lys Lys Asp Lys Cys Glu Pro Leu Glu Lys Gln His Glu Lys
160 165 170
Glu Arg Lys Gln Glu Glu Gly Glu Ser
175 180
<210> 12
<211> 198
<212> PRT
<213> Ciona savignyi
<220>
<223> [CDS]:2..595 from SEQ ID NO 9
<400> 12
Thr Leu Tyr Phe Met Phe Gly Thr Trp Ser Gly Leu Ile Gly Thr Ala
1 5 10 15
Leu Ser Ile Ile Ile Arg Met Glu Leu Ser Gln Pro Gly Gly Val Ile
20 25 30
Asp Asn Glu Asn Gly His Ile Tyr Asn Val Val Val Thr Ser His Ala
35 40 45
Phe Val Met Ile Phe Phe Phe Val Met Pro Ile Met Ile Gly Gly Phe
50 55 60
Gly Asn Trp Leu Ile Pro Met Met Ile Gly Ala Pro Asp Met Ala Phe
65 70 75 80
Pro Arg Met Asn Asn Met Ser Phe Trp Leu Leu Pro Pro Ala Phe Phe
85 90 95
Met Leu Leu Lys Ser Ser Phe Ala Gly Ala Ser Gly Val Gly Thr Gly
100 105 110
Trp Thr Val Tyr Pro Pro Leu Ser Ala Thr Val Gly His Ala His Ser
115 120 125
Gly Val Asp Met Ala Ile Phe Ser Leu His Leu Ala Gly Val Ser Ser
130 135 140
Ile Leu Gly Ser Val Asn Phe Leu Val Thr Leu Phe Asn Met Lys Asn
145 150 155 160
Lys Gly Lys Ser Met Gly Asp Leu Ser Leu Phe Cys Trp Ser Leu Ile
165 170 175
Val Thr Thr Ile Leu Leu Val Leu Ser Leu Pro Val Leu Ala Ala Ala
180 185 190
Ile Thr Met Leu Leu Phe
195