               SEQUENCE LISTING

<110> Smith, John

<120> Example of a Sequence Listing

<130> 11-00001

<140> EP1200123456
<141> 2012-08-01

<150> US12345678
<151> 2011-08-01

<160> 12

<170> BiSSAP 1.2

<210> 1
<211> 227
<212> DNA
<213> Homo sapiens

<220> 
<221> source
<222> 1..227
<223> /organism="Homo sapiens"
      /mol_type="unassigned DNA"

<400> 1
atgttggggg cccgcctcag gctctgggtc tgtgccttgt gcagcgtctg cagcatgagc     60

gtcctcagag cctatcccaa tgcctcccca ctgctcggct ccagctgggg tggcctgatc    120

cacctgtaca cagccacagc caggaacagc taccacctgc agatccacaa gaatggccat    180

gtggatggcg caccccatca gaccatctac agtgccctga tgatcag                  227


<210> 2
<211> 23
<212> DNA
<213> Artificial Sequence

<220> 
<221> source
<222> 1..23
<223> /organism="Artificial Sequence"
      /note="forward primer"
      /mol_type="unassigned DNA"

<400> 2
ggggacaagt ttgtacaaaa aag                                            23


<210> 3
<211> 29
<212> DNA
<213> Artificial Sequence

<220> 
<221> source
<222> 1..29
<223> /organism="Artificial Sequence"
      /note="reverse primer"
      /mol_type="unassigned DNA"

<400> 3
ccatgaacag ccaaatcacc aacgccaag                                      29


<210> 4
<211> 240
<212> DNA
<213> Paramecium aurelia

<220> 
<221> source
<222> 1..240
<223> /organism="Paramecium aurelia"
      /mol_type="unassigned DNA"

<220> 
<221> CDS
<222> 52..123
<223> /transl_table=6

<400> 4
agctgtagtc attcctgtgt cctcttctct ctgggcttct caccctgcta a tca gat    57
                                                         Ser Asp 
                                                         1       

ctc agg gag agt gtc ttg acc ctc ctc tgc ctt tgc agc ttc aca ggc    105
Leu Arg Glu Ser Val Leu Thr Leu Leu Cys Leu Cys Ser Phe Thr Gly 
        5                   10                  15              

agg cag gca ggc agc tga tgtggcaatt gctggcagtg ccacaggctt           153
Arg Gln Ala Gly Ser                                      
    20                                                   

ttcagccagg cttagggtgg gtccgccgcg gcgcggcggc ccctctcgcg ctcctctcgc  213

gcctctctct cgctctcctc tcgctcg                                      240

<210> 5
<400> 5
000

<210> 6
<211> 251
<212> PRT
<213> Homo sapiens


<220> 
<221> VARIANT
<222> 64
<223> Val

<400> 6
Met Leu Gly Ala Arg Leu Arg Leu Trp Val Cys Ala Leu Cys Ser Val 
1               5                   10                  15      
Cys Ser Met Ser Val Leu Arg Ala Tyr Pro Asn Ala Ser Pro Leu Leu 
            20                  25                  30          
Gly Ser Ser Trp Gly Gly Leu Ile His Leu Tyr Thr Ala Thr Ala Arg 
        35                  40                  45              
Asn Ser Tyr His Leu Gln Ile His Lys Asn Gly His Val Asp Gly Ala 
    50                  55                  60                  
Pro His Gln Thr Ile Tyr Ser Ala Leu Met Ile Arg Ser Glu Asp Ala 
65                  70                  75                  80  
Gly Phe Val Val Ile Thr Gly Val Met Ser Arg Arg Tyr Leu Cys Met 
                85                  90                  95      
Asp Phe Arg Gly Asn Ile Phe Gly Ser His Tyr Phe Asp Pro Glu Asn 
            100                 105                 110         
Cys Arg Phe Gln His Gln Thr Leu Glu Asn Gly Tyr Asp Val Tyr His 
        115                 120                 125             
Ser Pro Gln Tyr His Phe Leu Val Ser Leu Gly Arg Ala Lys Arg Ala 
    130                 135                 140                 
Phe Leu Pro Gly Met Asn Pro Pro Pro Tyr Ser Gln Phe Leu Ser Arg 
145                 150                 155                 160 
Arg Asn Glu Ile Pro Leu Ile His Phe Asn Thr Pro Ile Pro Arg Arg 
                165                 170                 175     
His Thr Arg Ser Ala Glu Asp Asp Ser Glu Arg Asp Pro Leu Asn Val 
            180                 185                 190         
Leu Lys Pro Arg Ala Arg Met Thr Pro Ala Pro Ala Ser Cys Ser Gln 
        195                 200                 205             
Glu Leu Pro Ser Ala Glu Asp Asn Ser Pro Met Ala Ser Asp Pro Leu 
    210                 215                 220                 
Gly Val Val Arg Gly Gly Arg Val Asn Thr His Ala Gly Gly Thr Gly 
225                 230                 235                 240 
Pro Glu Gly Cys Arg Pro Phe Ala Lys Phe Ile 
                245                 250     

<210> 7
<211> 886
<212> RNA
<213> Mus musculus

<220> 
<221> source
<222> 1..886
<223> /organism="Mus musculus"
      /note="mRNA for ubiquitin conjugating enzyme (Ubc25 gene)"
      /mol_type="unassigned RNA"

<220> 
<221> variation
<222> 459
<223> /allele="Ubc252b"
      /frequency="0.4"
      /replace="a"

<400> 7
gggccggagc cucggcggcg gcuucuuuuc ccgccccccc ggugcccccc ccaggcugcc      60

uccauuuccu caaggaaggu uccucggcgc ucucccuccc ccacagcgua gcggcgcacg     120

agcgggccgg gcgggcggcc gagaaguuuu cccagagaua aguucaccaa gauguccagu     180

gacaggcaaa ggucggauga ugagagcccu agcaccagca guggcaguuc agaugcagau     240

cagcgagacc cugccgcucc aaagcccgag gaacaggaag aaagaaaacc uucugccacc     300

cagcagaaga aaaacaccaa acucucuagc aaaacgacug cuaaguuauc cacuagugcu     360

aaaagaauuc agaaggagcu agcagagaua acccuugauc cuccuccuaa cugcagugcu     420

gggccuaaag gagauaacau uuaugaaugg aggucaacua uacuuggucc accagguucu     480

guauaugaag gugguguuuu uuuucuggau aucacauuuu cuucagauua uccauuuaag     540

ccaccaaagg uuacuuuccg uaccagaauc uaucacugca acaucaacag ucagggaguc     600

aucugccugg auauucugaa agacaacugg aguccugcuu ugacuauuuc aaagguuuug     660

cucucuauuu guucccuuuu gacagauugc aacccugcgg auccucuggu cggaagcaua     720

gccacucagu auuugaccaa cagagcagaa caugacagga uagccagaca guggaccaag     780

agauacgcaa cauaauucac aucauuugua ugcaguguga aggagcagaa ggccucuucc     840

cacugugcug cggaucuuua uagccuuuac aauacggacu ucugug                    886


<210> 8
<211> 803
<212> DNA
<213> Homo sapiens

<220> 
<221> source
<222> 1..803
<223> /organism="Homo sapiens"
      /mol_type="unassigned DNA"

<220> 
<221> CDS
<222> 79..681
<223> /transl_table=1

<220> 
<221> sig_peptide
<222> 79..132

<400> 8
gcccatagtt tattataaag gtgactgcac cctgcagcca ccagcactgc ctggctccac   60

gtgcctcctg gtctcagt atg gcg ctg tcc tgg gtt ctt aca gtc ctg agc    111
                    Met Ala Leu Ser Trp Val Leu Thr Val Leu Ser 
                                -15                 -10         

ctc cta cct ctg ctg gaa gcc cag atc cca ttg tgt gcc aac cta gta    159
Leu Leu Pro Leu Leu Glu Ala Gln Ile Pro Leu Cys Ala Asn Leu Val 
        -5              -1  1               5                   

ccg gtg ccc atc acc aac gcc acc ctg gac cag atc act ggc aag tgg    207
Pro Val Pro Ile Thr Asn Ala Thr Leu Asp Gln Ile Thr Gly Lys Trp 
10                  15                  20                  25  

ttt tat atc gca tcg gcc ttt cga aac gag gag tac aat aag tcg gtt    255
Phe Tyr Ile Ala Ser Ala Phe Arg Asn Glu Glu Tyr Asn Lys Ser Val 
                30                  35                  40      

cag gag atc caa gca acc ttc ttt tac ttc acc ccc aac aag aca gag    303
Gln Glu Ile Gln Ala Thr Phe Phe Tyr Phe Thr Pro Asn Lys Thr Glu 
            45                  50                  55          

gac acg atc ttt ctc aga gag tac cag acc cga cag gac cag tgc atc    351
Asp Thr Ile Phe Leu Arg Glu Tyr Gln Thr Arg Gln Asp Gln Cys Ile 
        60                  65                  70              

tat aac acc acc tac ctg aat gtc cag cgg gaa aat ggg acc atc tcc    399
Tyr Asn Thr Thr Tyr Leu Asn Val Gln Arg Glu Asn Gly Thr Ile Ser 
    75                  80                  85                  

aga tac gtg gga ggc caa gag cat ttc gct cac ttg ctg atc ctc agg    447
Arg Tyr Val Gly Gly Gln Glu His Phe Ala His Leu Leu Ile Leu Arg 
90                  95                  100                 105 

gac acc aag acc tac atg ctt gct ttt gac gtg aac gat gag aag aac    495
Asp Thr Lys Thr Tyr Met Leu Ala Phe Asp Val Asn Asp Glu Lys Asn 
                110                 115                 120     

tgg ggg ctg tct gtc tat gct gac aag cca gag acg acc aag gag caa    543
Trp Gly Leu Ser Val Tyr Ala Asp Lys Pro Glu Thr Thr Lys Glu Gln 
            125                 130                 135         

ctg gga gag ttc tac gaa gct ctc gac tgc ttg cgc att ccc aag tca    591
Leu Gly Glu Phe Tyr Glu Ala Leu Asp Cys Leu Arg Ile Pro Lys Ser 
        140                 145                 150             

gat gtc gtg tac acc gat tgg aaa aag gat aag tgt gag cca ctg gag    639
Asp Val Val Tyr Thr Asp Trp Lys Lys Asp Lys Cys Glu Pro Leu Glu 
    155                 160                 165                 

aag cag cac gag aag gag agg aaa cag gag gag ggg gaa tcc            681
Lys Gln His Glu Lys Glu Arg Lys Gln Glu Glu Gly Glu Ser 
170                 175                 180             

tagcaggaca cagccttgga tcaggacaga gacttggggc catcctgccc ctccaacccg  741

acatgtgtac ctcagctttt tccctcactt gcatcaataa agcttctgtg tttggaacag  801

ct                                                                 803

<210> 9
<211> 595
<212> DNA
<213> Ciona savignyi

<220> 
<221> source
<222> 1..595
<223> /organism="Ciona savignyi"
      /mol_type="unassigned DNA"

<220> 
<221> CDS
<222> 2..595
<223> /transl_table=13

<400> 9
a act ttg tat ttt ata ttt agg act tga tct aga tta att gga act gct   49
  Thr Leu Tyr Phe Met Phe Gly Thr Trp Ser Gly Leu Ile Gly Thr Ala 
  1               5                   10                  15      

ctg agt att att att cga ata gag tta tca cag cct aga gga gta att     97
Leu Ser Ile Ile Ile Arg Met Glu Leu Ser Gln Pro Gly Gly Val Ile 
            20                  25                  30          

gat aat gag aat aga cat att tat aat gta gta gta act tct cat gct    145
Asp Asn Glu Asn Gly His Ile Tyr Asn Val Val Val Thr Ser His Ala 
        35                  40                  45              

ttt gtt ata att ttt ttt ttt gtt ata cct att ata att aga ggt ttt    193
Phe Val Met Ile Phe Phe Phe Val Met Pro Ile Met Ile Gly Gly Phe 
    50                  55                  60                  

aga aat tga tta att cct ata ata att gga gct ccg gat ata gcg ttt    241
Gly Asn Trp Leu Ile Pro Met Met Ile Gly Ala Pro Asp Met Ala Phe 
65                  70                  75                  80  

cct cga ata aat aat ata agc ttt tga tta tta cct cct gct ttt ttt    289
Pro Arg Met Asn Asn Met Ser Phe Trp Leu Leu Pro Pro Ala Phe Phe 
                85                  90                  95      

atg tta tta aaa agt agt ttt gca gga gca tcg aga gta aga act gga    337
Met Leu Leu Lys Ser Ser Phe Ala Gly Ala Ser Gly Val Gly Thr Gly 
            100                 105                 110         

tgg aca gtt tat cct cct ttg tct gct acg gta aga cat gct cat tct    385
Trp Thr Val Tyr Pro Pro Leu Ser Ala Thr Val Gly His Ala His Ser 
        115                 120                 125             

aga gta gat ata gct att ttt tca tta cat tta gct agg gtt tct agt    433
Gly Val Asp Met Ala Ile Phe Ser Leu His Leu Ala Gly Val Ser Ser 
    130                 135                 140                 

att ttg aga tct gta aat ttt tta gtt act tta ttc aat ata aaa aat    481
Ile Leu Gly Ser Val Asn Phe Leu Val Thr Leu Phe Asn Met Lys Asn 
145                 150                 155                 160 

aaa ggt aaa tcg ata aga gat tta agt ttg ttt tgt tga tct ttg att    529
Lys Gly Lys Ser Met Gly Asp Leu Ser Leu Phe Cys Trp Ser Leu Ile 
                165                 170                 175     

gtt act aca att cta ctt gta ttg tca ttg ccg gtt tta gct gct gct    577
Val Thr Thr Ile Leu Leu Val Leu Ser Leu Pro Val Leu Ala Ala Ala 
            180                 185                 190         

att aca atg tta tta ttt                                            595
Ile Thr Met Leu Leu Phe 
        195             

<210> 10
<211> 23
<212> PRT
<213> Paramecium aurelia

<220> 
<223> [CDS]:52..123 from SEQ ID NO 4

<400> 10
Ser Asp Leu Arg Glu Ser Val Leu Thr Leu Leu Cys Leu Cys Ser Phe 
1               5                   10                  15      
Thr Gly Arg Gln Ala Gly Ser 
            20              

<210> 11
<211> 201
<212> PRT
<213> Homo sapiens

<220> 
<223> [CDS]:79..681 from SEQ ID NO 8

<220> 
<221> SIGNAL
<222> 1..18

<400> 11
Met Ala Leu Ser Trp Val Leu Thr Val Leu Ser Leu Leu Pro Leu Leu 
            -15                 -10                 -5          
Glu Ala Gln Ile Pro Leu Cys Ala Asn Leu Val Pro Val Pro Ile Thr 
    -1  1               5                   10                  
Asn Ala Thr Leu Asp Gln Ile Thr Gly Lys Trp Phe Tyr Ile Ala Ser 
15                  20                  25                  30  
Ala Phe Arg Asn Glu Glu Tyr Asn Lys Ser Val Gln Glu Ile Gln Ala 
                35                  40                  45      
Thr Phe Phe Tyr Phe Thr Pro Asn Lys Thr Glu Asp Thr Ile Phe Leu 
            50                  55                  60          
Arg Glu Tyr Gln Thr Arg Gln Asp Gln Cys Ile Tyr Asn Thr Thr Tyr 
        65                  70                  75              
Leu Asn Val Gln Arg Glu Asn Gly Thr Ile Ser Arg Tyr Val Gly Gly 
    80                  85                  90                  
Gln Glu His Phe Ala His Leu Leu Ile Leu Arg Asp Thr Lys Thr Tyr 
95                  100                 105                 110 
Met Leu Ala Phe Asp Val Asn Asp Glu Lys Asn Trp Gly Leu Ser Val 
                115                 120                 125     
Tyr Ala Asp Lys Pro Glu Thr Thr Lys Glu Gln Leu Gly Glu Phe Tyr 
            130                 135                 140         
Glu Ala Leu Asp Cys Leu Arg Ile Pro Lys Ser Asp Val Val Tyr Thr 
        145                 150                 155             
Asp Trp Lys Lys Asp Lys Cys Glu Pro Leu Glu Lys Gln His Glu Lys 
    160                 165                 170                 
Glu Arg Lys Gln Glu Glu Gly Glu Ser 
175                 180             

<210> 12
<211> 198
<212> PRT
<213> Ciona savignyi

<220> 
<223> [CDS]:2..595 from SEQ ID NO 9

<400> 12
Thr Leu Tyr Phe Met Phe Gly Thr Trp Ser Gly Leu Ile Gly Thr Ala 
1               5                   10                  15      
Leu Ser Ile Ile Ile Arg Met Glu Leu Ser Gln Pro Gly Gly Val Ile 
            20                  25                  30          
Asp Asn Glu Asn Gly His Ile Tyr Asn Val Val Val Thr Ser His Ala 
        35                  40                  45              
Phe Val Met Ile Phe Phe Phe Val Met Pro Ile Met Ile Gly Gly Phe 
    50                  55                  60                  
Gly Asn Trp Leu Ile Pro Met Met Ile Gly Ala Pro Asp Met Ala Phe 
65                  70                  75                  80  
Pro Arg Met Asn Asn Met Ser Phe Trp Leu Leu Pro Pro Ala Phe Phe 
                85                  90                  95      
Met Leu Leu Lys Ser Ser Phe Ala Gly Ala Ser Gly Val Gly Thr Gly 
            100                 105                 110         
Trp Thr Val Tyr Pro Pro Leu Ser Ala Thr Val Gly His Ala His Ser 
        115                 120                 125             
Gly Val Asp Met Ala Ile Phe Ser Leu His Leu Ala Gly Val Ser Ser 
    130                 135                 140                 
Ile Leu Gly Ser Val Asn Phe Leu Val Thr Leu Phe Asn Met Lys Asn 
145                 150                 155                 160 
Lys Gly Lys Ser Met Gly Asp Leu Ser Leu Phe Cys Trp Ser Leu Ile 
                165                 170                 175     
Val Thr Thr Ile Leu Leu Val Leu Ser Leu Pro Val Leu Ala Ala Ala 
            180                 185                 190         
Ile Thr Met Leu Leu Phe 
        195             

