| Qualifier |
transl_except |
| Definition |
translational exception: single codon the translation of which does not conform to genetic code defined by organism or transl_table. |
| Value Format |
"(pos:location,aa:<amino_acid>)" where <amino_acid> is the amino acid coded by the codon at the base_range position |
| Example |
<INSDQualifier_value>(pos:213..215,aa:Trp)</INSDQualifier_value>
<INSDQualifier_value>(pos:462..464,aa:OTHER)</INSDQualifier_value>
<INSDQualifier_value>(pos:1017,aa:TERM)</INSDQualifier_value>
<INSDQualifier_value>(pos:2000..2001,aa:TERM)</INSDQualifier_value>
<INSDQualifier_value>(pos:X22222:15..17,aa:Ala)</INSDQualifier_value>
|
| Comment |
if the amino acid is not one of the specific amino acids listed in Annex B.1, paragraph 3, use OTHER as <amino_acid> and provide the name of the unusual amino acid in a note qualifier; for modified amino-acid selenocysteine use three letter code ’Sec’ (one letter code ’U’ in amino-acid sequence) for <amino_acid>; for partial termination codons where TAA stop codon is completed by the addition of 3’ A residues to the mRNA either a single base_position or a base_range is used for the location, see the third and fourth examples above, in conjunction with a note qualifier indicating ‘stop codon completed by the addition of 3’ A residues to the mRNA’. |